MCP & AI Agent Integration

Seqera
automation.

13 automated actions available through Cerebral OS. Connect Seqera to any workflow, Cerebral, or Map — with full governance, audit trail, and dry-run safety on every execution.

No credit card required · 1,000 free runs · 13 actions available

Execution trace
live
13
actions
100%
governed
<200ms
latency
13
Automated actions
10
Read operations
3
Write operations
2,800+
Compatible Maps
Actions

What you can do
with Seqera.

Every action below is available as an MCP tool and a verb in Cerebral OS — callable from any AI agent, Claude, Cursor, Windsurf, or your own runtime via the BYOA API. All executions are governed, audited, and dry-run safe.

Cancel Workflow
seqera:cancel_workflow
Cancel a running workflow execution.
Write High risk
Create Workspace
seqera:create_workspace
Create a new workspace in Seqera Platform.
Write Medium risk
Get Compute Env
seqera:get_compute_env
Fetch a single compute environment by ID with configuration details.
Read Low risk
Get Dataset
seqera:get_dataset
Fetch a single dataset by ID with metadata and file information.
Read Low risk
Get Pipeline
seqera:get_pipeline
Fetch a single pipeline by ID with configuration and schema details.
Read Low risk
Get Workflow
seqera:get_workflow
Fetch a single workflow by ID with execution details and status.
Read Low risk
Get Workspace
seqera:get_workspace
Fetch a single workspace by ID with details and configuration.
Read Low risk
Launch Workflow
seqera:launch_workflow
Launch a new workflow execution in Seqera Platform.
Write Medium risk
List Compute Envs
seqera:list_compute_envs
List compute environments in a workspace with filtering options.
Read Low risk
List Datasets
seqera:list_datasets
List datasets in a workspace with search and filtering options.
Read Low risk
List Pipelines
seqera:list_pipelines
List pipelines in a workspace with search and filtering options.
Read Low risk
List Workflows
seqera:list_workflows
List workflows in a workspace with filtering and search options.
Read Low risk
List Workspaces
seqera:list_workspaces
List workspaces accessible to the authenticated user with filtering options.
Read Low risk
How it works

Every Seqera action
governed end-to-end.

Cerebral OS isn't a connector. It's the execution layer that sits in front of Seqera — adding governance, dry-run safety, and a full audit trail to every operation.

Governance first
Every verb carries a risk classification. High-risk writes require explicit approval gates before they execute in production.
Dry-run safe
Simulate any Seqera action before it touches production. See exactly what would happen before a single real call is made.
Immutable audit trail
Every Seqera action is logged — what ran, what changed, who approved it, when it happened. Full history on every verb, forever.
Seqera integration

Start free.
No credit card required.

Start free with 1,000 runs — no credit card required. Connect Seqera in minutes, dry-run every action before it touches production, full audit trail on everything.

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